GWAS-related eQTLs across different cancer types
We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).
|
Cancer type
|
eQTL type
|
tagSNP
|
Gene position (hg19)
|
p-value
|
|||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| BLCA | trans | rs1056667 | 1 | rs1056667 | chr6:26510564 | ZNF322B | chr9:99957633-99961910:- | 0.45 | 7.92 | 2.6E-14 | Educational attainment |
| BLCA | trans | rs1056667 | 1 | rs1078679 | chr6:26568741 | ZNF322B | chr9:99957633-99961910:- | 0.46 | 8.07 | 9.07E-15 | Educational attainment |
| BLCA | trans | rs6600671 | 1 | rs10794671 | chr1:121168242 | NBPF14 | chr1:148003643-148346791:- | 0.29 | 6.44 | 3.58E-10 | Hip geometry |
| BLCA | trans | rs6600671 | 1 | rs10903159 | chr1:121181997 | NBPF14 | chr1:148003643-148346791:- | 0.28 | 6.19 | 1.51E-9 | Hip geometry |
| BLCA | trans | rs6600671 | 1 | rs10903161 | chr1:121178741 | NBPF14 | chr1:148003643-148346791:- | 0.28 | 6.23 | 1.24E-9 | Hip geometry |
| BLCA | trans | rs1056667 | 1 | rs10946834 | chr6:26533664 | ZNF322B | chr9:99957633-99961910:- | 0.46 | 8.02 | 1.27E-14 | Educational attainment |
| BLCA | trans | rs1056667 | 1 | rs10946835 | chr6:26533757 | ZNF322B | chr9:99957633-99961910:- | 0.46 | 8.02 | 1.27E-14 | Educational attainment |
| BLCA | trans | rs6600671 | 1 | rs11249350 | chr1:121178446 | NBPF14 | chr1:148003643-148346791:- | 0.28 | 6.19 | 1.51E-9 | Hip geometry |
| BLCA | trans | rs6600671 | 1 | rs11249351 | chr1:121171942 | NBPF14 | chr1:148003643-148346791:- | 0.29 | 6.4 | 4.53E-10 | Hip geometry |
| BLCA | trans | rs1056667 | 1 | rs11756120 | chr6:26529808 | ZNF322B | chr9:99957633-99961910:- | 0.45 | 7.95 | 2.07E-14 | Educational attainment |
| BLCA | trans | rs853679 | 1 | rs11965538 | chr6:28239915 | BTN3A2 | chr6:26365398-26378546:+ | -0.38 | -6.06 | 3.17E-9 | Depression |
| BLCA | trans | rs12069385 | 1 | rs12069385 | chr1:35779988 | KRTAP13-1 | chr21:31768392-31769136:+ | 0.2 | 6.79 | 4.17E-11 | Night sleep phenotypes |
| BLCA | trans | rs6600671 | 1 | rs12145080 | chr1:121185531 | NBPF14 | chr1:148003643-148346791:- | -0.28 | -6.21 | 1.36E-9 | Hip geometry |
| BLCA | trans | rs1056667 | 1 | rs12526680 | chr6:26550954 | ZNF322B | chr9:99957633-99961910:- | 0.48 | 8.51 | 3.92E-16 | Educational attainment |
| BLCA | trans | rs6708331 | 1 | rs12999430 | chr2:70306785 | C1orf115 | chr1:220863628-220872499:+ | 0.43 | 6.01 | 4.28E-9 | Obesity-related traits |